alignmentSieve: Adding the option to keep the original tags in the processed BAM - #1255
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samuelruizperez wants to merge 2 commits into
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alignmentSieve: Adding the option to keep the original tags in the processed BAM#1255samuelruizperez wants to merge 2 commits into
samuelruizperez wants to merge 2 commits into
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This PR:
Adds the argument
--keepTagsin alignmentSieve.py to keep the original alignment tags in the filtered/shifted/output BAM. This can be useful to distinguish between read pairs from different secondary alignments when sorting after filtering, for example.PR checklist